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LIBRARY AND REFERENCES
 
     
IMAGE INTEGRITY IMAGE INTEGRITY
Links
 

The best collection of articles on Image Integrity can be found at:

http://scienceimageintegrity.org

(See links to the left).
Sedgewick, J. (2008). Scientific Imaging with Photoshop: Methods, Measurement and Output. Peachpit Press, Berkely, CA.

Chapter 1 in particular addresses Image Ethics.
POST-PROCESSING POST-PROCESSING AND QUANTITATION
Post-Processing in Photoshop

       
Books by Jerry Sedgewick

       JERRY SEDGEWICK CV PDF

          JERRY SEDGEWICK CV
Quantitation References
  Manual Thresholding to find areas and counts
  Regions of interest found through functions in Photoshop (High Pass filter method)
  Co-Existence found through thresholding method and overlays in Photoshop
  Manual drawing to find regions of interest in Photoshop
  Uneven Illumination Correction by Using Image Itself
   
   
   
   



Post Processing in Photoshop
  Sedgewick, J. (2008). Scientific Imaging with Photoshop: Methods, Measurement and Output. Peachpit Press, Berkely, CA.
  Sedgewick, J. (2002). Quick Photoshop for Research: A Guide to Digital Imaging for Photoshop 4x, 5x, 6x, & 7x. Kluwer Academic/Plenum Publishers.
  Sedgewick, J. (2011) Imaging Techniques in Signal Transduction IHC. (Book Chapter) Signal Transduction Immunohistochemistry: Methods and Protocols, Vol 717, Humana Press.
  Sedgewick, J. (2007). Considerations When Altering Digital Images. (Book Chapter) Essential Methodsand Protocol. Wiley Press.
Quantitation References
  Manual Thresholding to find areas and counts:

A. T. Haase, K. Henry, M. Zupancic, G. Sedgewick, R. A. Faust, H. Melroe, W. Cavert,K. Gebhard, K. Staskus, Z-Q Zhang, P. J. Dailey, H. H. Balfour Jr., A. Erice, A. S.Perelson. (1996) Quanitative Image Analysis of HIV-1 Infection in Lymphoid Tissue. Science Vol 274: 885-1048.
 

Regions of interest found through functions in Photoshop (High Pass filter method):

Wild R, Ramakrishnan S, Sedgewick J, Griffioen AW. (2000) Quantitative assessmentof angiogenesis and tumor vessel architecture by computer-assisted digital image analysis: effects of VEGF-toxin conjugate on tumor microvessel density. Microvasc Res.Vol. 59(3): 368-76.

Reilly C, Wietgrefe S, Sedgewick G, Haase A. (2007) Determination of simianimmunodeficiency virus production by infected activated and resting cells. AIDS.2007 Jan 11;21(2):163-8

 

Co-Existence found through thresholding method and overlays in Photoshop:

Z-Q Zhang, D. W. Notermans, G. Sedgewick, W. Cavert, S. Wietgrefe, M. Zupancic, K.Gebhard, K. Henry, L. Boies, Z. Chen, M. Jenkins, R. Mills, H. McDade, C. Goodwin, C.M. Schuwirth, S. A. Danner, A. T. Haase. (1997) Kinetics of CD4+ T Cell Repopulation of Lymphoid Tissues After Treatment of HIV-1 Infection. Proc Natl Acad Sci U S A.Vol 95(3): 1154-9.

 

Manual drawing to find regions of interest in Photoshop:

Grube E, Gerckens U, Yeung AC, Rowold S, Kirchhof N, Sedgewick J, Yadav JS,Stertzer S. (2001) Prevention of distal embolization during coronary angioplasty insaphenous vein grafts and native vessels using porous filter protection. Circulation.2001 Vol. 104(20): 2436-41.

 

Uneven Illumination Correction by Using Image Itself:

Leong FJ, Brady M, McGee JO. Correction of uneven illumination (vignetting) in digital microscopy images. J Clin Pathol. 2003 Aug;56(8):619-21

   
More to come....